The 2.0 version of rSNPBase

Variant report

Variant rs539517094
Chromosome Location chr1:61614371-61614372
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61600000-61617200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr1:61605400-61617200 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:61606000-61649000 Weak transcription Spleen Spleen
4 chr1:61606400-61616600 Weak transcription Primary hematopoietic stem cells blood
5 chr1:61607400-61615800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:61607600-61617000 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr1:61607600-61617800 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr1:61607600-61622200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr1:61607800-61615600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:61607800-61616000 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr1:61607800-61616400 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr1:61607800-61616600 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:61607800-61617200 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:61607800-61617800 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:61607800-61618000 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr1:61607800-61622600 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:61608400-61617000 Weak transcription Rectal Smooth Muscle rectum
18 chr1:61608400-61617200 Weak transcription Fetal Stomach stomach
19 chr1:61608600-61614400 Genic enhancers HepG2 liver
20 chr1:61608600-61617800 Weak transcription Adipose Nuclei Adipose
21 chr1:61608800-61614600 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:61609200-61617200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:61609200-61617400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr1:61609600-61615200 Weak transcription HMEC breast
25 chr1:61609600-61622800 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:61610000-61615000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:61610000-61615800 Weak transcription Brain Cingulate Gyrus brain
28 chr1:61610000-61621800 Weak transcription Fetal Brain Male brain
29 chr1:61610000-61623400 Weak transcription Fetal Brain Female brain
30 chr1:61610200-61614400 Weak transcription Hela-S3 cervix
31 chr1:61610200-61617200 Weak transcription Pancreas Pancrea
32 chr1:61610200-61622200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:61610200-61623200 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr1:61610400-61615800 Weak transcription Esophagus oesophagus
35 chr1:61610400-61616600 Weak transcription Brain Germinal Matrix brain
36 chr1:61611200-61615000 Enhancers Psoas Muscle Psoas
37 chr1:61612000-61615200 Weak transcription Small Intestine intestine
38 chr1:61612000-61635800 Weak transcription Lung lung
39 chr1:61612200-61614400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:61612200-61614600 Enhancers Liver Liver
41 chr1:61612200-61614600 Weak transcription Left Ventricle heart
42 chr1:61612400-61617200 Weak transcription Fetal Muscle Leg muscle
43 chr1:61612800-61626200 Weak transcription Fetal Muscle Trunk muscle
44 chr1:61613400-61614400 Enhancers Brain Substantia Nigra brain
45 chr1:61613400-61614400 Enhancers Fetal Heart heart
46 chr1:61613400-61614600 Enhancers Fetal Intestine Small intestine
47 chr1:61613400-61614600 Enhancers Stomach Smooth Muscle stomach
48 chr1:61613400-61614800 Enhancers Fetal Intestine Large intestine
49 chr1:61613400-61616000 Enhancers Right Atrium heart
50 chr1:61613400-61619800 Enhancers Colon Smooth Muscle Colon

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Last update: Aug 31, 2015