Variant report

Variant	rs539527255
Chromosome Location	chr6:128451258-128451259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886651	chr6:128450019-128565778	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:128434400-128455800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:128434400-128456800	Weak transcription	Fetal Stomach	stomach
6	chr6:128435600-128455600	Weak transcription	Left Ventricle	heart
7	chr6:128439600-128455600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:128439600-128456400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:128440200-128469200	Weak transcription	HSMM	muscle
10	chr6:128440400-128452200	Weak transcription	Osteobl	bone
11	chr6:128440400-128452400	Weak transcription	NHDF-Ad	bronchial
12	chr6:128443000-128455600	Weak transcription	Small Intestine	intestine
13	chr6:128443200-128455200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:128445800-128455800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:128446600-128455600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:128446600-128455600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:128446800-128460800	Weak transcription	HepG2	liver
18	chr6:128448000-128455800	Weak transcription	NHEK	skin
19	chr6:128448800-128451600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:128448800-128452200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:128450200-128480800	Weak transcription	Primary B cells from cord blood	blood
22	chr6:128450600-128451600	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:128450800-128451600	Enhancers	Fetal Heart	heart
24	chr6:128451000-128451600	Weak transcription	Brain Angular Gyrus	brain
25	chr6:128451000-128452200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:128451000-128452400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr6:128451000-128453000	Enhancers	Colon Smooth Muscle	Colon
28	chr6:128451200-128451600	Enhancers	Brain Cingulate Gyrus	brain
29	chr6:128451200-128452200	Weak transcription	Brain Substantia Nigra	brain

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