Variant report

Variant	rs539529857
Chromosome Location	chr7:83779483-83779484
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3692934	chr7:83778360-83786460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83770800-83795000	Weak transcription	NHDF-Ad	bronchial
2	chr7:83775400-83791600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:83776800-83784800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:83777000-83803000	Weak transcription	NHLF	lung
5	chr7:83777600-83780000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:83777800-83779600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr7:83777800-83780000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:83778000-83780000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:83778000-83803000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:83778400-83780000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr7:83778400-83780000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr7:83778400-83782200	Weak transcription	Fetal Lung	lung
13	chr7:83778600-83780000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr7:83778600-83784400	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:83778800-83779600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr7:83778800-83780000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:83779000-83780000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:83779200-83779600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:83779200-83780000	Active TSS	H1 Cell Line	embryonic stem cell
20	chr7:83779200-83780000	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr7:83779200-83780000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:83779200-83780200	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr7:83779200-83782200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:83779400-83780000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:83779400-83780000	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr7:83779400-83780000	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr7:83779400-83780000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr7:83779400-83791600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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