Variant report

Variant	rs539540456
Chromosome Location	chr18:29632759-29632760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29628181..29630533-chr18:29631429..29634258,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803283	chr18:29591102-29640430	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
2	nsv1061305	chr18:29609935-29664528	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757673	chr18:29632749-29674992	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2758719	chr18:29632749-29674992	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29602600-29664200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr18:29604600-29656000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:29606800-29637000	Weak transcription	Brain Anterior Caudate	brain
4	chr18:29615200-29648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr18:29616000-29640200	Weak transcription	Esophagus	oesophagus
6	chr18:29618400-29639800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:29618400-29646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:29618600-29642800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:29619400-29645400	Weak transcription	Fetal Stomach	stomach
10	chr18:29622800-29639800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr18:29626000-29657200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr18:29626200-29639800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr18:29627000-29637600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr18:29627400-29637600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr18:29629000-29633400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr18:29629200-29635000	Weak transcription	Lung	lung
17	chr18:29629200-29638200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr18:29630000-29633800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr18:29630000-29637800	Weak transcription	Right Atrium	heart
20	chr18:29630000-29638800	Weak transcription	Liver	Liver
21	chr18:29630000-29640200	Weak transcription	Thymus	Thymus
22	chr18:29630000-29646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr18:29630000-29664400	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:29630200-29635200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr18:29630200-29635200	Weak transcription	Adipose Nuclei	Adipose
26	chr18:29630200-29636400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr18:29630200-29646400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr18:29630400-29636200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr18:29630400-29646600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr18:29630400-29650800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr18:29630400-29664400	Weak transcription	Left Ventricle	heart
32	chr18:29630600-29635000	Weak transcription	Fetal Thymus	thymus
33	chr18:29630800-29633400	Weak transcription	Fetal Intestine Small	intestine
34	chr18:29630800-29634800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr18:29630800-29637800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr18:29630800-29641800	Weak transcription	Primary B cells from cord blood	blood
37	chr18:29630800-29658600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr18:29631000-29636200	Weak transcription	Fetal Intestine Large	intestine
39	chr18:29631200-29633800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr18:29631200-29634200	Strong transcription	Primary T cells from cord blood	blood
41	chr18:29631200-29634400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr18:29631200-29640800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr18:29631400-29634400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr18:29631400-29636200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr18:29631400-29636600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr18:29631400-29639000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr18:29631400-29671400	Weak transcription	Hela-S3	cervix
48	chr18:29631600-29632800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr18:29631600-29637800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr18:29631800-29635800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links