Variant report

Variant	rs539544616
Chromosome Location	chr5:97764955-97764956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv882409	chr5:97761687-97817930	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv882410	chr5:97764522-97810693	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
7	nsv882411	chr5:97764867-97817930	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97761400-97767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97762200-97767000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:97762400-97766600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:97763200-97765200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:97763400-97765000	Enhancers	NHLF	lung
6	chr5:97763400-97765200	Enhancers	HSMM	muscle
7	chr5:97763400-97767800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:97763800-97765000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:97763800-97765200	Enhancers	Stomach Smooth Muscle	stomach
10	chr5:97764200-97765200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:97764400-97765000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:97764400-97765000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:97764400-97765000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:97764400-97765000	Enhancers	Adipose Nuclei	Adipose
15	chr5:97764400-97765000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr5:97764400-97765000	Enhancers	Dnd41	blood
17	chr5:97764400-97765200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:97764400-97765200	Enhancers	HMEC	breast
19	chr5:97764400-97765200	Enhancers	Osteobl	bone
20	chr5:97764600-97765000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr5:97764600-97765000	Enhancers	Fetal Stomach	stomach
22	chr5:97764600-97765000	Enhancers	HUVEC	blood vessel
23	chr5:97764800-97765000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:97764800-97765000	Flanking Active TSS	NHDF-Ad	bronchial
25	chr5:97764800-97765200	Enhancers	HSMMtube	muscle

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