Variant report

Variant	rs539549556
Chromosome Location	chr12:20347184-20347185
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898855	chr12:20278430-20354786	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035141	chr12:20286595-20429040	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898856	chr12:20317201-20354786	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
4	nsv557700	chr12:20346383-20379710	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20328200-20354200	Weak transcription	Aorta	Aorta
2	chr12:20346800-20347200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:20346800-20347400	Active TSS	NHDF-Ad	bronchial
4	chr12:20346800-20347600	Active TSS	Osteobl	bone
5	chr12:20347000-20347200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr12:20347000-20347200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:20347000-20347400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:20347000-20347600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr12:20347000-20347600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr12:20347000-20347600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr12:20347000-20347600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr12:20347000-20347600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr12:20347000-20347600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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