Variant report

Variant	rs539560884
Chromosome Location	chr13:93162712-93162713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv471168	chr13:93138577-93208593	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900904	chr13:93138577-93208593	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900905	chr13:93138577-93211339	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv562728	chr13:93142706-93208593	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv456069	chr13:93161846-93204427	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv562729	chr13:93161846-93204427	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93157000-93165200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:93160600-93164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:93161800-93162800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:93162000-93163600	Enhancers	NHEK	skin
5	chr13:93162400-93163200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:93162600-93163000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:93162600-93163000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:93162600-93163000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:93162600-93163200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr13:93162600-93163200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:93162600-93163200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:93162600-93163200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:93162600-93163200	Enhancers	HMEC	breast
14	chr13:93162600-93163200	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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