Variant report

Variant	rs539580023
Chromosome Location	chr16:79872831-79872832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
2	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79869800-79873600	Weak transcription	Placenta	Placenta
3	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
4	chr16:79870600-79873000	Weak transcription	Adipose Nuclei	Adipose
5	chr16:79871600-79874400	Enhancers	Fetal Muscle Leg	muscle
6	chr16:79872000-79873000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr16:79872000-79873000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:79872000-79873000	Active TSS	Stomach Smooth Muscle	stomach
9	chr16:79872200-79873000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr16:79872200-79873000	Active TSS	NHDF-Ad	bronchial
11	chr16:79872400-79873000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr16:79872400-79873000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
13	chr16:79872400-79873000	Enhancers	HepG2	liver
14	chr16:79872400-79873400	Enhancers	Fetal Brain Female	brain
15	chr16:79872400-79874000	Enhancers	Fetal Intestine Small	intestine
16	chr16:79872400-79874800	Weak transcription	K562	blood
17	chr16:79872600-79873000	Flanking Active TSS	Fetal Lung	lung
18	chr16:79872600-79873000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr16:79872600-79873200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr16:79872600-79873200	Bivalent Enhancer	Brain Anterior Caudate	brain
21	chr16:79872600-79873400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr16:79872600-79874400	Enhancers	Fetal Heart	heart
23	chr16:79872600-79875000	Enhancers	Rectal Smooth Muscle	rectum
24	chr16:79872800-79873000	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
25	chr16:79872800-79873000	Flanking Active TSS	Brain Germinal Matrix	brain
26	chr16:79872800-79873000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
27	chr16:79872800-79873000	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr16:79872800-79873000	Enhancers	Fetal Brain Male	brain
29	chr16:79872800-79873000	Flanking Active TSS	Ovary	ovary
30	chr16:79872800-79873400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr16:79872800-79874600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr16:79872800-79874600	Enhancers	Colon Smooth Muscle	Colon
33	chr16:79872800-79875400	Enhancers	Fetal Stomach	stomach

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