Variant report

Variant	rs539585923
Chromosome Location	chr4:121657849-121657850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121620800-121671400	Weak transcription	Pancreas	Pancrea
2	chr4:121626000-121658200	Weak transcription	Aorta	Aorta
3	chr4:121630000-121671400	Weak transcription	Ovary	ovary
4	chr4:121641200-121670400	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:121641400-121669600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:121642800-121670600	Weak transcription	Fetal Stomach	stomach
7	chr4:121644200-121658200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:121645800-121662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:121647200-121671400	Weak transcription	Fetal Lung	lung
10	chr4:121647400-121670600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:121648200-121671600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:121648200-121671600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:121648400-121660200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:121648400-121670600	Weak transcription	Adipose Nuclei	Adipose
15	chr4:121649600-121670800	Weak transcription	Fetal Intestine Large	intestine
16	chr4:121651200-121669200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:121652000-121673600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:121652400-121670800	Weak transcription	Right Ventricle	heart
19	chr4:121652600-121687000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:121653000-121658600	Weak transcription	Right Atrium	heart
21	chr4:121653000-121660400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:121653000-121662000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr4:121653000-121662600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:121653000-121662800	Weak transcription	Lung	lung
25	chr4:121653200-121671600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:121653200-121672200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:121654600-121660200	Weak transcription	Esophagus	oesophagus
28	chr4:121655200-121659200	Enhancers	Fetal Heart	heart
29	chr4:121656000-121670600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:121656200-121661600	Weak transcription	Fetal Thymus	thymus
31	chr4:121657200-121658000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:121657600-121659000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:121657800-121658200	Enhancers	Left Ventricle	heart

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