Variant report

Variant	rs539601342
Chromosome Location	chr2:213575053-213575054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460093	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv584426	chr2:213563072-213610359	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2650475	chr2:213573880-213575439	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3437608	chr2:213574457-213575505	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2095937	chr2:213574477-213575184	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3459109	chr2:213574565-213575082	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3513856	chr2:213574569-213575068	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3513857	chr2:213574581-213575086	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv2828	chr2:213574590-213575133	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3459111	chr2:213574607-213575061	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213571600-213577000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:213572800-213578200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213574000-213576000	Weak transcription	NHLF	lung
4	chr2:213574200-213575200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:213574200-213577000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:213574800-213576800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:213575000-213575400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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