Variant report

Variant	rs539607101
Chromosome Location	chr5:115894082-115894083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115892597..115894869-chr5:115895299..115897417,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357229	chr5:115893403-115895551	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2549113	chr5:115893414-115894761	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv5985	chr5:115893882-115894705	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3420287	chr5:115893903-115895001	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2061795	chr5:115893958-115894657	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3469772	chr5:115893966-115894528	Weak transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3486582	chr5:115893985-115894566	Enhancers Weak transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3227	chr5:115893997-115894659	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3469769	chr5:115894012-115894555	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3486580	chr5:115894045-115894574	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3486581	chr5:115894066-115894496	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3469771	chr5:115894070-115894530	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3349690	chr5:115894081-115894510	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3469770	chr5:115894082-115894485	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115880800-115900600	Weak transcription	Fetal Kidney	kidney
2	chr5:115882600-115895400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:115885400-115894600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:115886600-115901000	Weak transcription	Placenta	Placenta
5	chr5:115887400-115895000	Weak transcription	Lung	lung
6	chr5:115887400-115897000	Weak transcription	Small Intestine	intestine
7	chr5:115889000-115895200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:115889400-115895000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115889400-115899400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:115889600-115895400	Weak transcription	Fetal Brain Female	brain
11	chr5:115889600-115898400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:115890000-115900800	Enhancers	Brain Hippocampus Middle	brain
13	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
14	chr5:115890800-115894800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:115890800-115894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:115890800-115894800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:115890800-115895000	Weak transcription	Left Ventricle	heart
18	chr5:115890800-115895600	Weak transcription	Pancreas	Pancrea
19	chr5:115890800-115895800	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:115890800-115898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
22	chr5:115891000-115894200	Enhancers	Brain Anterior Caudate	brain
23	chr5:115891000-115894600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:115891000-115894600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:115891000-115894600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:115891000-115895800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:115891000-115898200	Weak transcription	Right Atrium	heart
28	chr5:115891000-115900600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:115891000-115907600	Weak transcription	Ovary	ovary
30	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
31	chr5:115891400-115895400	Weak transcription	Psoas Muscle	Psoas
32	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:115891800-115894600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:115891800-115894800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:115892000-115894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:115892600-115894400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:115892600-115894800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr5:115893000-115894800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr5:115893000-115894800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:115893000-115894800	Weak transcription	Fetal Intestine Small	intestine
41	chr5:115893200-115894400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:115893200-115894800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:115893200-115895000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:115893200-115895200	Weak transcription	Fetal Muscle Leg	muscle
45	chr5:115893200-115895400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:115893400-115894600	Weak transcription	Brain Angular Gyrus	brain
47	chr5:115893400-115895000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr5:115893400-115895600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr5:115893600-115894400	Weak transcription	Brain Substantia Nigra	brain
50	chr5:115893600-115894600	Weak transcription	Brain Inferior Temporal Lobe	brain

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