Variant report

Variant	rs539608287
Chromosome Location	chr2:98273472-98273473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757819	chr2:97571109-98336507	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
2	esv2759077	chr2:97571109-98336507	Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
3	nsv431402	chr2:97669032-98281634	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	esv2756939	chr2:97708611-98274527	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv2763630	chr2:97731133-98279050	Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv431413	chr2:97753585-98274527	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv1001249	chr2:97972600-98274527	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1005846	chr2:97972600-98281634	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv1010167	chr2:98013814-98273619	Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv999627	chr2:98013814-98274527	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv1009263	chr2:98013814-98281634	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	esv1829350	chr2:98170405-98315611	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
14	nsv582512	chr2:98272634-98277804	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98264600-98277400	Weak transcription	Right Atrium	heart
2	chr2:98265200-98276800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:98265200-98277200	Weak transcription	HUVEC	blood vessel
4	chr2:98265400-98273600	Weak transcription	Hela-S3	cervix
5	chr2:98265600-98274400	Weak transcription	Psoas Muscle	Psoas
6	chr2:98265600-98277600	Weak transcription	Small Intestine	intestine
7	chr2:98265600-98277800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:98265800-98277200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:98266600-98277200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:98269000-98275200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:98270000-98275600	Strong transcription	Primary B cells from cord blood	blood
12	chr2:98270000-98275600	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr2:98270200-98275800	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr2:98270200-98276800	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr2:98270200-98277200	Strong transcription	Brain Cingulate Gyrus	brain
16	chr2:98270400-98275400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:98270400-98277200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr2:98270400-98278200	Strong transcription	Primary T cells from cord blood	blood
19	chr2:98270400-98278200	Weak transcription	Stomach Mucosa	stomach
20	chr2:98270600-98277000	Strong transcription	Osteobl	bone
21	chr2:98270600-98277400	Strong transcription	Dnd41	blood
22	chr2:98270600-98277600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:98270600-98277800	Strong transcription	Thymus	Thymus
24	chr2:98270800-98273600	Strong transcription	Gastric	stomach
25	chr2:98270800-98276000	Strong transcription	Pancreas	Pancrea
26	chr2:98270800-98276400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:98270800-98276400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr2:98270800-98276800	Strong transcription	Right Ventricle	heart
29	chr2:98270800-98277400	Strong transcription	Rectal Smooth Muscle	rectum
30	chr2:98271000-98275400	Strong transcription	NHDF-Ad	bronchial
31	chr2:98271000-98275800	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:98271000-98276800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:98271000-98277200	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr2:98271000-98278000	Weak transcription	Fetal Brain Male	brain
35	chr2:98271200-98273600	Weak transcription	HSMMtube	muscle
36	chr2:98271200-98275200	Weak transcription	Fetal Heart	heart
37	chr2:98271200-98275800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:98271200-98276000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:98271200-98276000	Strong transcription	Ovary	ovary
40	chr2:98271200-98277000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:98271200-98277200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:98271200-98277200	Strong transcription	Adipose Nuclei	Adipose
43	chr2:98271200-98277600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr2:98271200-98277800	Strong transcription	Colonic Mucosa	Colon
45	chr2:98271200-98278000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr2:98271400-98274600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:98271400-98276000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:98271400-98276800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:98271400-98276800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr2:98271400-98277000	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links