Variant report

Variant	rs539629310
Chromosome Location	chr1:69710813-69710814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1299	chr1:69687227-69732225	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1840142	chr1:69692232-69728843	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014209	chr1:69710467-69910241	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69709200-69712400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr1:69709400-69711000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:69709600-69711000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr1:69710200-69711800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:69710200-69711800	Weak transcription	Brain Germinal Matrix	brain
6	chr1:69710400-69711200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr1:69710400-69712800	Enhancers	Fetal Brain Male	brain
8	chr1:69710800-69711200	Weak transcription	Fetal Brain Female	brain
9	chr1:69710800-69712000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:69710800-69712200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links