Variant report

Variant	rs539632486
Chromosome Location	chr10:118030073-118030074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:118014146..118017027-chr10:118028962..118031890,3	MCF-7	breast:
2	chr10:117427698..117429252-chr10:118029636..118031173,2	MCF-7	breast:
3	chr10:118029653..118031249-chr10:118045197..118046929,2	MCF-7	breast:
4	chr10:117892801..117895046-chr10:118029774..118031284,2	MCF-7	breast:
5	chr10:118006561..118008463-chr10:118028900..118031732,2	MCF-7	breast:
6	chr10:117466869..117469113-chr10:118028705..118031024,3	MCF-7	breast:
7	chr10:117840235..117842704-chr10:118029621..118031631,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3332511	chr10:118030012-118035110	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118020600-118030200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:118023400-118030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:118023800-118030200	Weak transcription	HSMMtube	muscle
4	chr10:118026600-118030400	Weak transcription	Brain Angular Gyrus	brain
5	chr10:118028000-118030200	Weak transcription	HSMM	muscle
6	chr10:118028400-118030200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:118028600-118030600	Enhancers	Liver	Liver
8	chr10:118029600-118030400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
9	chr10:118029600-118030600	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:118029600-118034200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:118029800-118030600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:118029800-118030600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
13	chr10:118029800-118030800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
14	chr10:118029800-118032800	Active TSS	Fetal Kidney	kidney
15	chr10:118030000-118030200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:118030000-118030200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:118030000-118030200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:118030000-118030200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
19	chr10:118030000-118030400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:118030000-118030600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
21	chr10:118030000-118032000	Bivalent Enhancer	Fetal Brain Male	brain
22	chr10:118030000-118034200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:118030000-118034400	Active TSS	Rectal Smooth Muscle	rectum
24	chr10:118030000-118034600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum

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