Variant report

Variant	rs539642627
Chromosome Location	chr7:32999292-32999293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:32981007..32984575-chr7:32996149..32999305,3	K562	blood:
2	chr7:32997687..32999563-chr7:33147479..33150290,2	K562	blood:
3	chr7:32982489..32988008-chr7:32995538..32999914,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164610	Chromatin interaction
ENSG00000205763	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	esv3478254	chr7:32956181-33133477	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3478255	chr7:32956181-33133477	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3528603	chr7:32956254-33133429	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3528604	chr7:32956254-33133429	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3366191	chr7:32956659-33134592	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1033096	chr7:32965040-33039206	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	esv3418466	chr7:32968130-33138898	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	esv14217	chr7:32999213-33053044	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32998200-33038600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:32998400-33000200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:32998400-33001800	Weak transcription	Fetal Brain Male	brain
4	chr7:32998400-33003000	Weak transcription	Fetal Kidney	kidney
5	chr7:32998400-33003400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:32998400-33003400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:32998400-33003600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:32998400-33011200	Weak transcription	Gastric	stomach
9	chr7:32998600-32999400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:32998600-32999400	Enhancers	Adipose Nuclei	Adipose
11	chr7:32998600-32999400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr7:32998600-32999400	Enhancers	NHDF-Ad	bronchial
13	chr7:32998600-32999400	Enhancers	NHEK	skin
14	chr7:32998600-32999600	Enhancers	HepG2	liver
15	chr7:32998600-33000400	Weak transcription	Liver	Liver
16	chr7:32998600-33002600	Weak transcription	Fetal Intestine Small	intestine
17	chr7:32998600-33003000	Weak transcription	Fetal Lung	lung
18	chr7:32998600-33003200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:32998600-33003200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:32998600-33003200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:32998600-33003200	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:32998600-33003200	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:32998600-33003200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:32998600-33003400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:32998600-33003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:32998600-33003400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:32998600-33003400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:32998600-33003400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:32998600-33003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:32998600-33003400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:32998600-33003400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:32998600-33003400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:32998600-33003400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:32998600-33003400	Weak transcription	Fetal Intestine Large	intestine
35	chr7:32998600-33003400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:32998600-33003400	Weak transcription	Placenta	Placenta
37	chr7:32998600-33003400	Weak transcription	Fetal Stomach	stomach
38	chr7:32998600-33003400	Weak transcription	Left Ventricle	heart
39	chr7:32998600-33003400	Weak transcription	Ovary	ovary
40	chr7:32998600-33003400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:32998600-33003400	Weak transcription	K562	blood
42	chr7:32998600-33003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:32998600-33003600	Weak transcription	Brain Germinal Matrix	brain
44	chr7:32998600-33003600	Weak transcription	Esophagus	oesophagus
45	chr7:32998600-33003600	Weak transcription	HMEC	breast
46	chr7:32998600-33003600	Weak transcription	NHLF	lung
47	chr7:32998600-33003800	Weak transcription	Stomach Mucosa	stomach
48	chr7:32998600-33004000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:32998600-33011200	Weak transcription	A549	lung
50	chr7:32998600-33014200	Weak transcription	HSMMtube	muscle

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