Variant report

Variant	rs539662868
Chromosome Location	chr5:147111627-147111628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3444248	chr5:147094808-147116217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3404718	chr5:147111059-147115357	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147101600-147114400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:147102000-147112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:147102200-147114400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:147103600-147121800	Weak transcription	Fetal Brain Male	brain
6	chr5:147105600-147114200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:147105800-147114400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:147107200-147112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:147109800-147113400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:147110400-147113000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:147110400-147113000	Enhancers	Brain Substantia Nigra	brain
12	chr5:147110600-147112000	Enhancers	Fetal Intestine Small	intestine
13	chr5:147110600-147112200	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:147110800-147112200	Enhancers	Fetal Lung	lung
15	chr5:147111200-147111800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:147111200-147111800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr5:147111200-147112000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:147111200-147112000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:147111200-147112200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:147111200-147112200	Active TSS	Brain Cingulate Gyrus	brain
21	chr5:147111200-147112200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:147111200-147112600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:147111200-147114600	Weak transcription	Stomach Mucosa	stomach
24	chr5:147111400-147112200	Active TSS	Brain Anterior Caudate	brain
25	chr5:147111400-147112400	Active TSS	Brain Angular Gyrus	brain
26	chr5:147111400-147112600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:147111600-147111800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr5:147111600-147111800	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr5:147111600-147111800	Active TSS	Brain Hippocampus Middle	brain
30	chr5:147111600-147112000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:147111600-147112000	Active TSS	Fetal Brain Female	brain
32	chr5:147111600-147112200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:147111600-147112200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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