The 2.0 version of rSNPBase

Variant report

Variant rs539664500
Chromosome Location chr1:211572162-211572163
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211556800-211585800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:211556800-211589800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:211557000-211572400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:211557000-211573200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr1:211557000-211575000 Weak transcription Brain Cingulate Gyrus brain
6 chr1:211557000-211576600 Weak transcription Left Ventricle heart
7 chr1:211557000-211580600 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr1:211557000-211581000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:211557000-211581800 Weak transcription Fetal Kidney kidney
10 chr1:211557200-211572800 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr1:211557200-211573400 Weak transcription Muscle Satellite Cultured Cells --
12 chr1:211557400-211572800 Weak transcription Fetal Intestine Large intestine
13 chr1:211557400-211572800 Weak transcription K562 blood
14 chr1:211557400-211574400 Weak transcription Brain Substantia Nigra brain
15 chr1:211557400-211574400 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:211557400-211575600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:211557400-211576000 Weak transcription Fetal Intestine Small intestine
18 chr1:211557600-211573400 Weak transcription GM12878-XiMat blood
19 chr1:211557600-211573400 Weak transcription Hela-S3 cervix
20 chr1:211557600-211576200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:211561600-211573000 Weak transcription Right Ventricle heart
22 chr1:211565200-211573000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr1:211565600-211574000 Strong transcription Liver Liver
24 chr1:211566200-211572800 Weak transcription Brain Inferior Temporal Lobe brain
25 chr1:211566800-211574600 Weak transcription Pancreas Pancrea
26 chr1:211566800-211574800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:211566800-211576800 Weak transcription Duodenum Mucosa Duodenum
28 chr1:211567000-211574600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:211567000-211581600 Weak transcription Gastric stomach
30 chr1:211568200-211573400 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr1:211568200-211575000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:211568400-211573000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:211568600-211573600 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr1:211568800-211572200 Weak transcription Fetal Muscle Trunk muscle
35 chr1:211569000-211576600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:211569600-211572600 Weak transcription Placenta Placenta
37 chr1:211569800-211573600 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr1:211570000-211572800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr1:211570000-211573000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr1:211570000-211573200 Weak transcription Ovary ovary
41 chr1:211570000-211574800 Weak transcription Adipose Nuclei Adipose
42 chr1:211570000-211575000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:211570200-211574800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:211570800-211581000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
45 chr1:211571400-211572400 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr1:211571400-211572400 Strong transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:211571600-211573000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:211571600-211573000 Weak transcription Primary B cells from cord blood blood
49 chr1:211571600-211573800 Active TSS ES-I3 Cell Line embryonic stem cell
50 chr1:211571600-211573800 Active TSS H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015