Variant report

Variant	rs539674316
Chromosome Location	chr9:117894422-117894423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893768	chr9:117853103-117903975	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117889400-117895000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:117889800-117894800	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:117889800-117895200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117890200-117894800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:117890200-117909000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:117890400-117895000	Weak transcription	HSMMtube	muscle
7	chr9:117890400-117895800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:117893600-117894800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:117894000-117895600	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:117894200-117894800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:117894200-117894800	Weak transcription	NHDF-Ad	bronchial
12	chr9:117894200-117894800	Enhancers	Osteobl	bone
13	chr9:117894200-117895000	Enhancers	NHLF	lung
14	chr9:117894200-117895400	Enhancers	Fetal Kidney	kidney
15	chr9:117894200-117898800	Enhancers	Fetal Stomach	stomach
16	chr9:117894400-117894600	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:117894400-117895000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:117894400-117895000	Enhancers	HSMM	muscle
19	chr9:117894400-117895400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:117894400-117896600	Enhancers	NH-A	brain

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