Variant report

Variant	rs539683555
Chromosome Location	chr6:163572458-163572459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163567508..163570798-chr6:163571018..163574333,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2762628	chr6:163572148-163620903	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163568600-163574000	Enhancers	Fetal Brain Male	brain
2	chr6:163570400-163590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:163570600-163574000	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:163571200-163573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:163571600-163574000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:163572200-163572600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:163572200-163572600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:163572200-163572600	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr6:163572200-163572600	Flanking Active TSS	Brain Germinal Matrix	brain
10	chr6:163572200-163572600	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr6:163572200-163572600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:163572200-163572600	Flanking Active TSS	Fetal Brain Female	brain
13	chr6:163572200-163572800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:163572200-163573800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:163572200-163573800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:163572200-163574000	Enhancers	Brain Substantia Nigra	brain
17	chr6:163572400-163572600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:163572400-163572600	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr6:163572400-163572600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:163572400-163572800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links