The 2.0 version of rSNPBase

Variant report

Variant rs539684027
Chromosome Location chr4:54332500-54332501
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54295600-54339400 Weak transcription Fetal Brain Male brain
2 chr4:54316800-54332600 Weak transcription Esophagus oesophagus
3 chr4:54317400-54332600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr4:54320000-54332600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr4:54320000-54332600 Weak transcription Aorta Aorta
6 chr4:54320000-54332800 Weak transcription Fetal Stomach stomach
7 chr4:54320000-54342000 Weak transcription Pancreas Pancrea
8 chr4:54320000-54353200 Weak transcription Gastric stomach
9 chr4:54321000-54332600 Weak transcription H9 Cell Line embryonic stem cell
10 chr4:54321400-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr4:54321800-54339800 Weak transcription Placenta Amnion Placenta Amnion
12 chr4:54326400-54332600 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr4:54327600-54347800 Weak transcription Fetal Muscle Trunk muscle
14 chr4:54327800-54334600 Weak transcription NHLF lung
15 chr4:54327800-54335200 Weak transcription HMEC breast
16 chr4:54327800-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr4:54327800-54362200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr4:54328000-54332600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr4:54328000-54332800 Weak transcription A549 lung
20 chr4:54328000-54339400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr4:54328200-54362000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr4:54328400-54333600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr4:54328400-54362000 Weak transcription Brain Angular Gyrus brain
24 chr4:54328600-54332600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr4:54328600-54332600 Weak transcription Fetal Muscle Leg muscle
26 chr4:54328600-54339600 Weak transcription Fetal Brain Female brain
27 chr4:54329200-54332600 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr4:54329400-54332800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr4:54329600-54339000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr4:54329600-54341600 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr4:54329600-54341800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr4:54329600-54342000 Weak transcription NH-A brain
33 chr4:54329600-54351000 Weak transcription Adipose Nuclei Adipose
34 chr4:54329600-54373600 Weak transcription Brain Germinal Matrix brain
35 chr4:54329800-54332600 Weak transcription Fetal Intestine Large intestine
36 chr4:54329800-54332600 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr4:54329800-54341600 Weak transcription NHDF-Ad bronchial
38 chr4:54329800-54374000 Weak transcription Left Ventricle heart
39 chr4:54330000-54332600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
40 chr4:54330200-54332800 Weak transcription Placenta Placenta
41 chr4:54330200-54340800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr4:54330200-54341800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr4:54330400-54339200 Weak transcription Liver Liver
44 chr4:54331600-54334600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr4:54331800-54332800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
46 chr4:54332000-54333000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
47 chr4:54332000-54341800 Weak transcription Muscle Satellite Cultured Cells --
48 chr4:54332000-54342400 Weak transcription HSMM muscle
49 chr4:54332200-54333600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
50 chr4:54332200-54333600 ZNF genes & repeats Fetal Intestine Small intestine

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Last update: Aug 31, 2015