Variant report

Variant	rs539693339
Chromosome Location	chr1:174134367-174134368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174127362..174130761-chr1:174131482..174135069,5	MCF-7	breast:
2	chr1:173999328..174000926-chr1:174134327..174136474,2	K562	blood:
3	chr1:174132073..174134827-chr1:174138516..174140914,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152061	Chromatin interaction
ENSG00000227373	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv1008314	chr1:174080192-174311023	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv535207	chr1:174080192-174311023	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv1799250	chr1:174119038-174484277	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv1800060	chr1:174132703-174501836	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv465672	chr1:174133251-174469905	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv548194	chr1:174133251-174469905	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174129600-174164800	Weak transcription	Gastric	stomach
2	chr1:174129600-174173200	Weak transcription	Pancreas	Pancrea
3	chr1:174129800-174134800	Weak transcription	Ovary	ovary
4	chr1:174129800-174135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:174129800-174135000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:174129800-174135000	Weak transcription	Spleen	Spleen
7	chr1:174129800-174137000	Weak transcription	Fetal Lung	lung
8	chr1:174129800-174145600	Weak transcription	Fetal Thymus	thymus
9	chr1:174129800-174147000	Weak transcription	Fetal Brain Male	brain
10	chr1:174129800-174149600	Weak transcription	Aorta	Aorta
11	chr1:174130000-174134800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:174130000-174134800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:174130000-174134800	Weak transcription	Liver	Liver
14	chr1:174130000-174134800	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:174130000-174135400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr1:174130000-174135400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:174130000-174135800	Weak transcription	Right Ventricle	heart
18	chr1:174130000-174136200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:174130000-174144400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:174130000-174157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:174130200-174135200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:174130200-174135400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr1:174130200-174138000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:174130200-174143200	Weak transcription	Primary B cells from cord blood	blood
25	chr1:174130200-174145000	Weak transcription	NHEK	skin
26	chr1:174130200-174145600	Weak transcription	Fetal Stomach	stomach
27	chr1:174130200-174147400	Weak transcription	Hela-S3	cervix
28	chr1:174130800-174134800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr1:174130800-174138200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:174130800-174156600	Weak transcription	Primary T cells from cord blood	blood
31	chr1:174131000-174135400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:174131200-174134600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:174131200-174135000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr1:174131200-174138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:174131400-174136600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr1:174131800-174134600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:174131800-174134600	Weak transcription	Left Ventricle	heart
38	chr1:174131800-174135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:174131800-174135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr1:174131800-174135800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:174132000-174134400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr1:174132200-174135200	Flanking Active TSS	GM12878-XiMat	blood
43	chr1:174132400-174134800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr1:174132600-174134600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr1:174132600-174135000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:174132600-174136000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr1:174132600-174136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:174132600-174138400	Weak transcription	Right Atrium	heart
49	chr1:174133000-174134600	Enhancers	Fetal Intestine Small	intestine
50	chr1:174133000-174135200	Enhancers	Duodenum Mucosa	Duodenum

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