Variant report

Variant	rs539706896
Chromosome Location	chr9:115915062-115915063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115913631..115915237-chr9:115923889..115925758,2	K562	blood:
2	chr9:115905644..115908349-chr9:115914691..115916468,2	K562	blood:
3	chr9:115913327..115916086-chr9:115970304..115972231,2	MCF-7	breast:
4	chr9:115913338..115915206-chr9:115920921..115923373,3	K562	blood:
5	chr9:115887611..115890231-chr9:115913519..115916345,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv893743	chr9:115867276-115917783	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1051654	chr9:115881588-115935663	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv1035406	chr9:115883978-116003980	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540201	chr9:115883978-116003980	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv615212	chr9:115891009-115915859	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv466507	chr9:115905850-115936903	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv615213	chr9:115905850-115936903	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv8563	chr9:115914276-115917151	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115913000-115915800	Active TSS	Brain Angular Gyrus	brain
2	chr9:115913000-115916600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:115913800-115915400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr9:115913800-115915400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr9:115913800-115915400	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr9:115913800-115915800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
7	chr9:115913800-115918000	Weak transcription	Aorta	Aorta
8	chr9:115914000-115915200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:115914000-115915200	Enhancers	Stomach Mucosa	stomach
10	chr9:115914000-115915400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:115914000-115915400	Enhancers	Small Intestine	intestine
12	chr9:115914000-115915600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:115914000-115923600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:115914000-115925000	Weak transcription	Fetal Kidney	kidney
15	chr9:115914200-115915200	Enhancers	Right Ventricle	heart
16	chr9:115914200-115915200	Flanking Active TSS	HSMMtube	muscle
17	chr9:115914200-115915400	Enhancers	Colon Smooth Muscle	Colon
18	chr9:115914200-115915400	Enhancers	Gastric	stomach
19	chr9:115914200-115915400	Enhancers	Hela-S3	cervix
20	chr9:115914200-115915800	Flanking Active TSS	HMEC	breast
21	chr9:115914200-115917200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:115914200-115917600	Weak transcription	Primary T cells from cord blood	blood
23	chr9:115914200-115917600	Enhancers	NHLF	lung
24	chr9:115914200-115917800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:115914200-115919400	Weak transcription	Fetal Stomach	stomach
26	chr9:115914200-115919600	Weak transcription	Fetal Lung	lung
27	chr9:115914200-115919600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:115914200-115920200	Weak transcription	Brain Germinal Matrix	brain
29	chr9:115914200-115922800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:115914200-115922800	Weak transcription	Fetal Heart	heart
31	chr9:115914200-115923600	Weak transcription	A549	lung
32	chr9:115914200-115923800	Weak transcription	HUVEC	blood vessel
33	chr9:115914400-115915200	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
34	chr9:115914400-115915400	Flanking Active TSS	HSMM	muscle
35	chr9:115914400-115915600	Enhancers	HepG2	liver
36	chr9:115914400-115915600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr9:115914400-115917200	Enhancers	Left Ventricle	heart
38	chr9:115914400-115917400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:115914400-115917600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr9:115914400-115917800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:115914400-115919200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr9:115914400-115920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:115914400-115925000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:115914600-115915200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
45	chr9:115914600-115915200	Enhancers	Primary hematopoietic stem cells	blood
46	chr9:115914600-115915200	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr9:115914600-115915400	Enhancers	Psoas Muscle	Psoas
48	chr9:115914600-115916400	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr9:115914600-115916600	Weak transcription	Fetal Muscle Leg	muscle
50	chr9:115914600-115917400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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