Variant report

Variant	rs539719722
Chromosome Location	chr15:78201043-78201044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78200418..78201162-chr15:78910453..78911204,2	K562	blood:
2	chr15:78200661..78201180-chr15:79032859..79033389,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv1827357	chr15:78200594-78206047	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1823600	chr15:78200594-78219757	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78180000-78215600	Weak transcription	Right Atrium	heart
2	chr15:78192000-78202800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:78199400-78201600	Weak transcription	Right Ventricle	heart
4	chr15:78200200-78201400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78200200-78201600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:78200200-78203000	Enhancers	Colonic Mucosa	Colon
7	chr15:78200400-78201200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr15:78200400-78201200	Enhancers	HSMMtube	muscle
9	chr15:78200400-78201400	Enhancers	HSMM	muscle
10	chr15:78200400-78202400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:78200400-78202800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:78200400-78202800	Enhancers	Fetal Intestine Small	intestine
13	chr15:78200400-78203200	Enhancers	Esophagus	oesophagus
14	chr15:78200400-78203200	Enhancers	Stomach Mucosa	stomach
15	chr15:78200400-78203800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:78200600-78201200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:78200600-78201400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:78200600-78201800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:78200600-78202000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr15:78200600-78202800	Enhancers	Fetal Muscle Trunk	muscle
21	chr15:78200800-78201200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:78200800-78201200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr15:78200800-78201200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr15:78200800-78201200	Enhancers	NH-A	brain
25	chr15:78200800-78201400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:78200800-78201400	Enhancers	Fetal Muscle Leg	muscle
27	chr15:78200800-78201400	Flanking Active TSS	Hela-S3	cervix
28	chr15:78200800-78201800	Bivalent Enhancer	Placenta	Placenta
29	chr15:78200800-78202800	Enhancers	Fetal Intestine Large	intestine
30	chr15:78200800-78202800	Enhancers	A549	lung
31	chr15:78201000-78201400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:78201000-78201400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:78201000-78201400	Enhancers	HepG2	liver
34	chr15:78201000-78202800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:78201000-78202800	Weak transcription	Fetal Thymus	thymus

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