Variant report

Variant	rs539720543
Chromosome Location	chr3:119348825-119348826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119297851..119299731-chr3:119347893..119350770,2	MCF-7	breast:
2	chr3:119348305..119350713-chr3:119351647..119354186,2	MCF-7	breast:
3	chr3:119298163..119299885-chr3:119348210..119351201,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144843	Chromatin interaction
ENSG00000272967	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv1795621	chr3:119344693-119353995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1795670	chr3:119347400-119353995	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv1797032	chr3:119347400-119353995	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1800265	chr3:119347400-119353995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv591364	chr3:119348130-119353995	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119322200-119349200	Weak transcription	Gastric	stomach
2	chr3:119340800-119357600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:119341400-119364600	Weak transcription	Liver	Liver
4	chr3:119343200-119349200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:119343800-119349200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:119343800-119351400	Enhancers	Psoas Muscle	Psoas
7	chr3:119344200-119349600	Enhancers	Spleen	Spleen
8	chr3:119344400-119351000	Weak transcription	Pancreas	Pancrea
9	chr3:119344600-119352000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:119344800-119350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:119345000-119349800	Enhancers	Right Ventricle	heart
12	chr3:119345000-119350000	Enhancers	Adipose Nuclei	Adipose
13	chr3:119345200-119349400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:119345200-119350800	Weak transcription	Fetal Heart	heart
15	chr3:119345200-119357600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:119345400-119349000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:119345800-119349200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:119345800-119355200	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:119346000-119351400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:119346200-119349800	Enhancers	Right Atrium	heart
21	chr3:119346200-119351000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:119346400-119350800	Enhancers	Placenta	Placenta
23	chr3:119346400-119351200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:119346600-119349200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:119346600-119349400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr3:119346600-119350400	Enhancers	HSMMtube	muscle
27	chr3:119346800-119350600	Enhancers	Osteobl	bone
28	chr3:119346800-119352600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr3:119347000-119349000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:119347000-119349200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:119347200-119349000	Weak transcription	HUVEC	blood vessel
32	chr3:119347600-119349000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:119347600-119349200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:119347600-119349200	Weak transcription	Lung	lung
35	chr3:119347600-119350400	Enhancers	HSMM	muscle
36	chr3:119347800-119349000	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:119347800-119349000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:119347800-119349200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:119347800-119350000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:119347800-119356400	Weak transcription	Fetal Thymus	thymus
41	chr3:119348000-119349000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:119348000-119349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:119348200-119349000	Weak transcription	Ovary	ovary
44	chr3:119348200-119350000	Enhancers	GM12878-XiMat	blood
45	chr3:119348400-119349800	Weak transcription	Aorta	Aorta
46	chr3:119348600-119349000	Weak transcription	NHDF-Ad	bronchial
47	chr3:119348800-119349800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:119348800-119349800	Enhancers	Primary hematopoietic stem cells	blood
49	chr3:119348800-119349800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:119348800-119349800	Enhancers	Left Ventricle	heart

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