Variant report

Variant	rs539724836
Chromosome Location	chr2:173161753-173161754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173160607..173162129-chr6:26033215..26035045,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137259	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173151400-173168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:173159200-173162200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:173159200-173162200	Weak transcription	Ovary	ovary
4	chr2:173159200-173164400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:173159200-173164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:173159400-173164200	Weak transcription	HMEC	breast
7	chr2:173160400-173161800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr2:173160400-173162400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
9	chr2:173160400-173162600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:173160400-173162800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr2:173160600-173161800	Enhancers	NHEK	skin
12	chr2:173160600-173162000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:173160600-173162200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr2:173160600-173162200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:173160600-173162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:173160600-173162600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr2:173160600-173162600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr2:173160600-173162600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:173160600-173163200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr2:173161000-173162400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:173161000-173163200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
22	chr2:173161200-173172600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:173161400-173161800	Enhancers	Osteobl	bone
24	chr2:173161400-173172200	Weak transcription	Right Atrium	heart
25	chr2:173161600-173162000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:173161600-173162800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:173161600-173165800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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