The 2.0 version of rSNPBase

Variant report

Variant rs539724973
Chromosome Location chr16:81981954-81981955
allele -/ATAGTCATCATCTTCC
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:81920400-81982000 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr16:81925800-81992600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr16:81933000-81983600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr16:81936000-81982000 Weak transcription Gastric stomach
5 chr16:81936000-81984600 Strong transcription Primary monocytes fromperipheralblood blood
6 chr16:81945000-81984600 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr16:81946200-81985200 Weak transcription Rectal Smooth Muscle rectum
8 chr16:81950600-81982000 Strong transcription GM12878-XiMat blood
9 chr16:81952000-81982800 Strong transcription Primary B cells from peripheral blood blood
10 chr16:81952400-81983000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr16:81952800-81984600 Strong transcription Liver Liver
12 chr16:81954800-81991800 Weak transcription Fetal Thymus thymus
13 chr16:81959600-81983800 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr16:81960600-81982400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr16:81961600-81984600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr16:81962600-81995800 Weak transcription Small Intestine intestine
17 chr16:81962800-81983600 Weak transcription Primary T cells fromperipheralblood blood
18 chr16:81963000-81982000 Strong transcription Breast Myoepithelial Primary Cells Breast
19 chr16:81963000-81984600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
20 chr16:81963600-81983200 Strong transcription Primary neutrophils fromperipheralblood blood
21 chr16:81967400-81984600 Weak transcription Placenta Placenta
22 chr16:81968200-81984200 Strong transcription Primary hematopoietic stem cells blood
23 chr16:81970200-81990800 Weak transcription Pancreas Pancrea
24 chr16:81970800-81991200 Weak transcription Thymus Thymus
25 chr16:81970800-81994600 Weak transcription Fetal Intestine Large intestine
26 chr16:81971600-81984600 Weak transcription Left Ventricle heart
27 chr16:81972200-81993200 Weak transcription Fetal Kidney kidney
28 chr16:81973200-81984600 Weak transcription Fetal Intestine Small intestine
29 chr16:81975600-81983200 Strong transcription Duodenum Mucosa Duodenum
30 chr16:81975600-81984800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr16:81976000-81983000 Strong transcription Adipose Nuclei Adipose
32 chr16:81976800-81984600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr16:81977000-81982000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr16:81978200-81982800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
35 chr16:81979400-81982600 Strong transcription Fetal Adrenal Gland Adrenal Gland
36 chr16:81979400-81982600 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr16:81979600-81982200 Strong transcription Spleen Spleen
38 chr16:81979600-81982600 Strong transcription Lung lung
39 chr16:81979800-81982800 Strong transcription Duodenum Smooth Muscle Duodenum
40 chr16:81981200-81982200 Weak transcription Fetal Stomach stomach
41 chr16:81981800-81985400 ZNF genes & repeats Primary B cells from cord blood blood

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Last update: Aug 31, 2015