Variant report

Variant	rs539725961
Chromosome Location	chr7:66806169-66806170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66805244..66806812-chr7:66806851..66808891,2	MCF-7	breast:
2	chr7:66805031..66806726-chr7:66806842..66808833,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv966839	chr7:66805198-66815088	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66775200-66807600	Weak transcription	Colonic Mucosa	Colon
2	chr7:66778800-66809000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:66779800-66807600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:66780400-66808200	Weak transcription	GM12878-XiMat	blood
5	chr7:66780400-66809400	Weak transcription	A549	lung
6	chr7:66781400-66810200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:66782800-66809400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:66785800-66808200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:66785800-66816200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:66786000-66809400	Weak transcription	Dnd41	blood
11	chr7:66786200-66806600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:66786200-66809400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:66786400-66807200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:66786800-66809400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:66791800-66807800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:66799400-66806800	Weak transcription	Primary B cells from cord blood	blood
17	chr7:66799400-66808200	Weak transcription	Fetal Lung	lung
18	chr7:66800000-66808400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:66800400-66808000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:66800600-66806800	Weak transcription	Right Ventricle	heart
21	chr7:66801000-66808600	Weak transcription	Aorta	Aorta
22	chr7:66801000-66809200	Weak transcription	Esophagus	oesophagus
23	chr7:66801200-66807000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:66801200-66812000	Weak transcription	Gastric	stomach
25	chr7:66802000-66809000	Weak transcription	NHEK	skin
26	chr7:66802400-66808200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:66802400-66808600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:66802600-66809600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:66802600-66811800	Weak transcription	Stomach Mucosa	stomach
30	chr7:66802800-66814800	Weak transcription	HSMMtube	muscle
31	chr7:66803200-66807200	Weak transcription	HepG2	liver
32	chr7:66803200-66811600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:66803400-66809000	Weak transcription	Colon Smooth Muscle	Colon
34	chr7:66804200-66806200	Weak transcription	Fetal Kidney	kidney
35	chr7:66804400-66806200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:66804400-66806800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr7:66804400-66807000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:66804400-66807000	Strong transcription	Fetal Intestine Small	intestine
39	chr7:66804400-66807200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:66804400-66807200	Strong transcription	Adipose Nuclei	Adipose
41	chr7:66804400-66807400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:66804400-66807600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:66804400-66807600	Strong transcription	Fetal Stomach	stomach
44	chr7:66804400-66807800	Strong transcription	Fetal Muscle Leg	muscle
45	chr7:66804400-66809800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:66804400-66810000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr7:66804400-66810200	Strong transcription	Fetal Intestine Large	intestine
48	chr7:66804600-66806400	Strong transcription	Brain Substantia Nigra	brain
49	chr7:66804600-66806600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr7:66804600-66807000	Strong transcription	Placenta	Placenta

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