Variant report

Variant	rs539739439
Chromosome Location	chr4:132643411-132643412
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr4:132643327-132643565	GM12878	blood:	n/a	n/a
2	ATF2	chr4:132643327-132643727	GM12878	blood:	n/a	n/a
3	NFIC	chr4:132643244-132643633	GM12878	blood:	n/a	n/a
4	MEF2A	chr4:132643353-132643641	GM12878	blood:	n/a	n/a
5	RUNX3	chr4:132643331-132643645	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RN7SL205P	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533069	chr4:132266740-132906467	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv427695	chr4:132369789-132930726	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv879978	chr4:132553385-132649577	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv19423	chr4:132558697-132899638	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1806509	chr4:132569215-132903485	Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1811989	chr4:132574098-132902027	Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1807680	chr4:132577148-132902227	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv10567	chr4:132577264-132644285	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv830068	chr4:132580776-132800497	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv10792	chr4:132581305-132685860	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv10755	chr4:132581408-132644295	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv821123	chr4:132581408-132644295	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1815795	chr4:132581771-132773067	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1812383	chr4:132585798-132903485	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv1798694	chr4:132592476-132887605	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
16	esv1804660	chr4:132592512-132902227	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
17	esv1811099	chr4:132592712-132902027	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv428450	chr4:132597437-132930726	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv879979	chr4:132600769-132757887	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv879980	chr4:132613114-132687177	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv879981	chr4:132613114-132816821	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv879982	chr4:132631628-132687177	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv879983	chr4:132631628-132689843	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv879984	chr4:132631628-132757887	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv508312	chr4:132638704-132700532	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv966320	chr4:132640081-132687345	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv879985	chr4:132640243-132689843	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
28	nsv879986	chr4:132640243-132716060	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv879987	chr4:132640243-132757887	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
30	esv1828363	chr4:132641191-132687015	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv10568	chr4:132641874-132895723	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv4510	chr4:132642264-132689727	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
33	esv3422985	chr4:132642402-132649700	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
34	esv3394238	chr4:132643202-132646800	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
35	esv3354147	chr4:132643202-132646900	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
36	esv3428562	chr4:132643202-132646900	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:132643200-132644000	Enhancers	GM12878-XiMat	blood
2	chr4:132643400-132643600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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