Variant report

Variant	rs539773139
Chromosome Location	chr12:103569161-103569162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103342479..103343468-chr12:103569109..103570014,11	MCF-7	breast:
2	chr12:103567485..103570052-chr12:103761974..103764560,2	MCF-7	breast:
3	chr12:103342479..103343468-chr12:103569109..103570109,23	MCF-7	breast:
4	chr12:103567572..103571382-chr12:103642751..103645285,4	MCF-7	breast:
5	chr12:103569111..103570024-chr12:103918043..103918908,7	MCF-7	breast:
6	chr12:103567206..103569823-chr12:103663759..103665929,2	MCF-7	breast:
7	chr12:103342538..103343552-chr12:103569117..103569983,3	MCF-7	breast:
8	chr12:103569111..103570024-chr12:103918043..103919091,5	MCF-7	breast:
9	chr12:103569149..103570117-chr12:103917984..103918759,8	MCF-7	breast:
10	chr12:103569035..103569938-chr12:103766846..103767430,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv899476	chr12:103568316-103619085	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103565400-103570400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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