Variant report

Variant	rs539794877
Chromosome Location	chr1:102119617-102119618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870459	chr1:102112168-102166616	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3346165	chr1:102119081-102119618	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102118000-102122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:102118800-102121200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:102119000-102119800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:102119000-102119800	Enhancers	HMEC	breast
5	chr1:102119200-102119800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr1:102119200-102119800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:102119200-102120400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:102119600-102119800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:102119600-102119800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:102119600-102119800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:102119600-102119800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr1:102119600-102119800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr1:102119600-102119800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr1:102119600-102120200	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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