Variant report

Variant	rs539803412
Chromosome Location	chr7:57928621-57928622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607048	chr7:57190580-58018981	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
2	esv2761119	chr7:57190580-58019970	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1029476	chr7:57260920-58019983	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1030441	chr7:57288140-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv1020184	chr7:57318828-58019983	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1015195	chr7:57334076-58019983	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1019359	chr7:57473854-58019983	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	esv2758611	chr7:57586049-57959574	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	esv2759532	chr7:57586049-57959574	Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1024942	chr7:57586049-58019983	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv433384	chr7:57633285-58029051	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1025576	chr7:57697923-58019983	Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv1023594	chr7:57721276-58019983	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv981487	chr7:57740775-57932576	ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1016501	chr7:57780599-58019983	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv1016244	chr7:57783619-58019983	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv1023283	chr7:57800875-57950919	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1033455	chr7:57800875-58019983	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
19	nsv1017454	chr7:57819767-58019983	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv1026010	chr7:57855143-58019983	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv1034211	chr7:57855144-58019983	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv1032446	chr7:57855343-58019983	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
23	nsv1016844	chr7:57885901-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv1029423	chr7:57885902-58019983	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv1020882	chr7:57886101-58019983	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv981641	chr7:57921041-57930539	Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv607104	chr7:57923927-58019061	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv607105	chr7:57923927-58051868	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv607106	chr7:57923927-58054092	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv967306	chr7:57924012-57930539	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv3448695	chr7:57926710-57930408	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
32	esv3322245	chr7:57927035-57929783	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
33	esv3324556	chr7:57927460-57930158	Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
34	esv3371039	chr7:57928010-57929758	Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57927400-57929200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:57927600-57928800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:57927600-57928800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr7:57927600-57928800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:57927600-57928800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr7:57927600-57928800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
7	chr7:57927600-57928800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
8	chr7:57927600-57928800	Active TSS	Rectal Smooth Muscle	rectum
9	chr7:57927600-57929000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:57927600-57929000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:57927600-57929000	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
12	chr7:57927600-57929000	ZNF genes & repeats	Lung	lung
13	chr7:57927600-57929000	Bivalent/Poised TSS	Ovary	ovary
14	chr7:57927600-57929000	Active TSS	Pancreas	Pancrea
15	chr7:57927600-57929000	Active TSS	A549	lung
16	chr7:57927600-57929200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:57927600-57929200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:57927600-57929200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:57927600-57929200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:57927600-57929200	Bivalent/Poised TSS	Psoas Muscle	Psoas
21	chr7:57927600-57929200	ZNF genes & repeats	HepG2	liver
22	chr7:57927600-57929400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
23	chr7:57927800-57928800	Active TSS	Primary T cells from cord blood	blood
24	chr7:57927800-57928800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:57927800-57928800	Bivalent/Poised TSS	Fetal Stomach	stomach
26	chr7:57927800-57929000	Bivalent/Poised TSS	Esophagus	oesophagus
27	chr7:57927800-57929000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
28	chr7:57927800-57929000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr7:57927800-57929200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:57927800-57929200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
31	chr7:57927800-57929200	Bivalent/Poised TSS	HSMMtube	muscle
32	chr7:57927800-57929200	Bivalent/Poised TSS	Osteobl	bone
33	chr7:57927800-57929400	Active TSS	Liver	Liver
34	chr7:57928000-57928800	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:57928000-57928800	Active TSS	Aorta	Aorta
36	chr7:57928000-57928800	Active TSS	HSMM	muscle
37	chr7:57928000-57929000	Bivalent/Poised TSS	Left Ventricle	heart
38	chr7:57928000-57929000	Bivalent/Poised TSS	Right Ventricle	heart
39	chr7:57928000-57929200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
40	chr7:57928200-57928800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:57928200-57928800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:57928400-57929200	Active TSS	Brain Substantia Nigra	brain
43	chr7:57928400-57929200	Active TSS	Right Atrium	heart
44	chr7:57928600-57928800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:57928600-57928800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
46	chr7:57928600-57929000	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr7:57928600-57929200	Flanking Bivalent TSS/Enh	Placenta	Placenta

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