Variant report

Variant	rs539804433
Chromosome Location	chr8:124824996-124824997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124823606..124825496-chr8:124827931..124830037,3	MCF-7	breast:
2	chr8:124774301..124776211-chr8:124822631..124825115,2	MCF-7	breast:
3	chr8:124819621..124821524-chr8:124823128..124825244,2	MCF-7	breast:
4	chr8:124824345..124826636-chr8:124826682..124828481,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176853	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv971699	chr8:124824693-124829198	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124785800-124829000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:124786000-124825200	Strong transcription	Fetal Thymus	thymus
3	chr8:124786200-124825200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:124786400-124827200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:124787000-124827000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:124789400-124825200	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr8:124789800-124827400	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:124790000-124827800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:124790200-124828600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:124790800-124825200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:124791000-124828600	Strong transcription	Primary B cells from cord blood	blood
12	chr8:124791000-124828600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr8:124791200-124828600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:124791200-124828600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr8:124791200-124829000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:124791200-124829200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr8:124794200-124825000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr8:124797800-124826000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:124798400-124826400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:124806800-124828400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:124808200-124825000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:124808400-124831600	Weak transcription	Esophagus	oesophagus
23	chr8:124809800-124833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:124810200-124829600	Weak transcription	Pancreas	Pancrea
25	chr8:124810600-124831600	Weak transcription	Gastric	stomach
26	chr8:124811600-124830400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr8:124812800-124829800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:124813000-124830600	Weak transcription	Colonic Mucosa	Colon
29	chr8:124813200-124829000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr8:124813400-124837600	Weak transcription	Brain Substantia Nigra	brain
31	chr8:124814000-124826800	Weak transcription	Brain Germinal Matrix	brain
32	chr8:124814200-124826600	Weak transcription	Fetal Brain Female	brain
33	chr8:124814800-124837400	Weak transcription	Brain Hippocampus Middle	brain
34	chr8:124815400-124825200	Strong transcription	Placenta	Placenta
35	chr8:124816400-124825400	Strong transcription	HUVEC	blood vessel
36	chr8:124816600-124825200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:124816800-124825200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr8:124816800-124825600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr8:124816800-124825600	Strong transcription	HSMM	muscle
40	chr8:124816800-124826800	Strong transcription	Dnd41	blood
41	chr8:124816800-124828800	Strong transcription	Adipose Nuclei	Adipose
42	chr8:124817000-124825200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr8:124817000-124825200	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:124817000-124825200	Strong transcription	Osteobl	bone
45	chr8:124817000-124828800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:124817000-124829000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:124817200-124825200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr8:124817200-124828600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:124817400-124825200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:124817400-124828600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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