Variant report

Variant	rs539824086
Chromosome Location	chr15:57495081-57495082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57485138..57486752-chr15:57494991..57496956,2	K562	blood:
2	chr15:57489296..57493196-chr15:57493593..57496438,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv457164	chr15:57495060-57559387	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv569578	chr15:57495060-57559387	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57444400-57507400	Weak transcription	K562	blood
2	chr15:57453800-57524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:57457200-57499400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:57458200-57505200	Strong transcription	Fetal Thymus	thymus
5	chr15:57478800-57526200	Weak transcription	Hela-S3	cervix
6	chr15:57479400-57524800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:57481800-57524600	Weak transcription	Right Ventricle	heart
8	chr15:57484800-57496200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:57484800-57502000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:57485000-57501000	Weak transcription	Spleen	Spleen
11	chr15:57485000-57501800	Weak transcription	Lung	lung
12	chr15:57485000-57506200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:57485600-57505000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:57486600-57496000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:57486800-57505800	Weak transcription	NHDF-Ad	bronchial
16	chr15:57487000-57496600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:57487000-57524400	Weak transcription	Placenta	Placenta
18	chr15:57487200-57503000	Weak transcription	Liver	Liver
19	chr15:57487200-57511200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:57488200-57511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:57488400-57496000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:57488400-57496000	Weak transcription	Fetal Intestine Small	intestine
23	chr15:57489200-57496000	Weak transcription	Osteobl	bone
24	chr15:57489200-57506000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:57489400-57506200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:57490600-57505800	Weak transcription	NH-A	brain
27	chr15:57490800-57496400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:57491000-57501400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:57491000-57505600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:57491000-57506000	Weak transcription	HMEC	breast
31	chr15:57491200-57508000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:57491400-57496000	Weak transcription	Ovary	ovary
33	chr15:57491400-57497200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:57491400-57497200	Weak transcription	Right Atrium	heart
35	chr15:57491400-57497800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:57491400-57500800	Weak transcription	Thymus	Thymus
37	chr15:57491400-57501200	Weak transcription	Primary B cells from cord blood	blood
38	chr15:57491400-57503000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:57491400-57503000	Weak transcription	Primary T cells from cord blood	blood
40	chr15:57491400-57503200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:57491400-57505800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:57491400-57505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:57491400-57506000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:57491400-57506200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:57491400-57510000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:57491400-57510000	Weak transcription	Psoas Muscle	Psoas
47	chr15:57491400-57510200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr15:57491400-57511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:57491600-57496000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:57491600-57498400	Weak transcription	Rectal Mucosa Donor 29	rectum

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