Variant report

Variant	rs539831719
Chromosome Location	chr20:13483452-13483453
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv585435	chr20:13410638-13582476	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv458871	chr20:13447896-13573415	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv585436	chr20:13447896-13573415	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv1922220	chr20:13483093-13483531	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13463800-13505400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr20:13464000-13493800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr20:13468000-13483600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:13468200-13483600	Weak transcription	Right Ventricle	heart
5	chr20:13470200-13505800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:13473400-13505800	Weak transcription	HSMM	muscle
7	chr20:13474400-13483600	Weak transcription	Left Ventricle	heart
8	chr20:13474400-13496800	Weak transcription	Pancreas	Pancrea
9	chr20:13477400-13484000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr20:13478200-13503800	Weak transcription	Gastric	stomach
11	chr20:13479200-13486200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr20:13480000-13488200	Weak transcription	NHEK	skin
13	chr20:13480000-13490400	ZNF genes & repeats	Dnd41	blood
14	chr20:13480200-13484400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:13482000-13483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr20:13482800-13484200	ZNF genes & repeats	Liver	Liver
17	chr20:13482800-13485800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr20:13483000-13484000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr20:13483000-13484000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr20:13483000-13484200	ZNF genes & repeats	Fetal Lung	lung
21	chr20:13483000-13484200	ZNF genes & repeats	A549	lung
22	chr20:13483200-13483600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr20:13483200-13484000	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr20:13483200-13485200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr20:13483200-13485400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
26	chr20:13483200-13509200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr20:13483400-13483600	ZNF genes & repeats	Fetal Kidney	kidney
28	chr20:13483400-13483800	Strong transcription	Ovary	ovary
29	chr20:13483400-13484000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr20:13483400-13484000	ZNF genes & repeats	Aorta	Aorta
31	chr20:13483400-13484000	ZNF genes & repeats	Fetal Stomach	stomach
32	chr20:13483400-13484000	ZNF genes & repeats	Fetal Thymus	thymus
33	chr20:13483400-13484000	Strong transcription	Thymus	Thymus
34	chr20:13483400-13484200	ZNF genes & repeats	Primary B cells from cord blood	blood
35	chr20:13483400-13484200	ZNF genes & repeats	Fetal Intestine Large	intestine
36	chr20:13483400-13484200	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr20:13483400-13485000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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