Variant report

Variant	rs539831891
Chromosome Location	chr14:68555262-68555263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68554509..68557334-chr14:69260770..69262937,2	MCF-7	breast:
2	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
3	chr14:68555228..68557396-chr14:69260627..69263402,2	MCF-7	breast:
4	chr14:68554904..68556745-chr14:68657326..68660228,3	MCF-7	breast:
5	chr14:68548399..68550785-chr14:68554801..68556437,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3424025	chr14:68553899-68555797	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:68545800-68555800	Weak transcription	Small Intestine	intestine
3	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68549200-68555400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:68552800-68555400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:68553000-68555400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:68553200-68555400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:68553200-68555600	Weak transcription	Stomach Mucosa	stomach
9	chr14:68553200-68556000	Weak transcription	Fetal Intestine Small	intestine
10	chr14:68553400-68555400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:68553400-68555400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:68554200-68555400	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr14:68554600-68556400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:68554800-68555600	Enhancers	Dnd41	blood
15	chr14:68554800-68555800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:68554800-68556200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr14:68554800-68556200	Enhancers	HSMMtube	muscle
18	chr14:68554800-68556400	Enhancers	Fetal Thymus	thymus
19	chr14:68555000-68555400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:68555000-68555400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr14:68555000-68555400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:68555000-68555400	Active TSS	Colon Smooth Muscle	Colon
23	chr14:68555000-68555400	Flanking Active TSS	Fetal Kidney	kidney
24	chr14:68555000-68555600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr14:68555000-68555600	Active TSS	Stomach Smooth Muscle	stomach
26	chr14:68555000-68555800	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr14:68555000-68555800	Flanking Active TSS	HSMM	muscle
28	chr14:68555000-68556000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:68555000-68556000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:68555000-68556000	Flanking Active TSS	Fetal Lung	lung
31	chr14:68555000-68556200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr14:68555000-68556200	Flanking Active TSS	NHEK	skin
33	chr14:68555000-68556400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:68555000-68556400	Enhancers	Primary T cells from cord blood	blood
35	chr14:68555000-68556400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:68555000-68556400	Enhancers	Fetal Brain Male	brain
37	chr14:68555000-68556400	Flanking Active TSS	A549	lung
38	chr14:68555000-68556600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:68555000-68556600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr14:68555200-68555400	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr14:68555200-68555400	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr14:68555200-68555400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr14:68555200-68555400	Enhancers	NH-A	brain
44	chr14:68555200-68555600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:68555200-68555600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:68555200-68555600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr14:68555200-68555600	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr14:68555200-68555600	Flanking Active TSS	Fetal Brain Female	brain
49	chr14:68555200-68555600	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr14:68555200-68555600	Flanking Active TSS	Psoas Muscle	Psoas

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