Variant report

Variant	rs539835981
Chromosome Location	chr1:196238829-196238830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3363737	chr1:196238450-196240064	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196214000-196241400	Weak transcription	Liver	Liver
2	chr1:196214600-196247800	Weak transcription	Ovary	ovary
3	chr1:196234800-196248600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:196234800-196252200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:196234800-196255400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:196236400-196248600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:196236600-196247800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:196236800-196249400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:196237000-196246000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:196237000-196249800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:196237000-196253600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:196237200-196253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:196237800-196245400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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