Variant report

Variant	rs539875563
Chromosome Location	chr7:99462674-99462675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99461799..99464694-chr7:99500550..99502670,2	MCF-7	breast:
2	chr7:99358230..99360940-chr7:99460072..99462897,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv3476466	chr7:99459416-99464314	Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3508513	chr7:99460216-99464714	Bivalent Enhancer Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1814542	chr7:99460458-99463380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3508511	chr7:99460666-99464064	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3436631	chr7:99460916-99465214	Bivalent Enhancer Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv981404	chr7:99461243-99463619	Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3476467	chr7:99461254-99463662	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3508515	chr7:99461279-99463665	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3508517	chr7:99461298-99463649	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3508518	chr7:99461305-99463609	ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3476471	chr7:99461310-99463630	Weak transcription Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3476469	chr7:99461321-99463623	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3508516	chr7:99461322-99464005	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3476470	chr7:99461325-99463592	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3508512	chr7:99461333-99463612	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3476468	chr7:99461376-99463567	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv3508514	chr7:99461386-99463567	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv3476472	chr7:99461390-99463565	Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3508520	chr7:99461390-99463565	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv16723	chr7:99461451-99463547	Bivalent Enhancer Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv607926	chr7:99461483-99463049	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv1804626	chr7:99461483-99463380	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv1804652	chr7:99461483-99463380	Weak transcription Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv1806312	chr7:99461483-99463380	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv1807118	chr7:99461483-99463380	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv1808111	chr7:99461483-99463380	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv1808552	chr7:99461483-99463380	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv1810862	chr7:99461483-99463380	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv1812535	chr7:99461483-99463380	Bivalent Enhancer Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv1812867	chr7:99461483-99463380	Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv1813239	chr7:99461483-99463380	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv1813305	chr7:99461483-99463380	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	esv1814242	chr7:99461483-99463380	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	esv1814357	chr7:99461483-99463380	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	esv1814894	chr7:99461483-99463380	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	esv1814969	chr7:99461483-99463380	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv607927	chr7:99461483-99463380	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	esv1812457	chr7:99461483-99463818	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	esv1809167	chr7:99461694-99463818	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv607928	chr7:99461953-99463380	Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv607929	chr7:99462065-99463380	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99433800-99465000	Strong transcription	Liver	Liver
2	chr7:99458200-99489600	Weak transcription	Pancreas	Pancrea
3	chr7:99462400-99463200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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