Variant report

Variant	rs539880635
Chromosome Location	chr11:16582074-16582075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983173	chr11:16581343-16600284	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3391536	chr11:16581913-16582143	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3326949	chr11:16581914-16582250	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3361010	chr11:16582033-16582348	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3328530	chr11:16582043-16582171	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3369277	chr11:16582067-16582197	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16573000-16594600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16580000-16582800	Weak transcription	Psoas Muscle	Psoas
3	chr11:16581000-16583000	Weak transcription	Fetal Heart	heart
4	chr11:16581400-16583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16581800-16584200	Weak transcription	Left Ventricle	heart
6	chr11:16581800-16584200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links