Variant report

Variant	rs539886519
Chromosome Location	chr5:74191981-74191982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv965527	chr5:74181141-74195624	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74191200-74193000	Enhancers	Fetal Brain Female	brain
2	chr5:74191400-74192200	Enhancers	Fetal Lung	lung
3	chr5:74191400-74192400	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:74191400-74192400	Enhancers	Fetal Heart	heart
5	chr5:74191600-74192200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:74191600-74192200	Enhancers	Stomach Smooth Muscle	stomach
7	chr5:74191600-74192400	Enhancers	Liver	Liver
8	chr5:74191600-74192400	Enhancers	Brain Angular Gyrus	brain
9	chr5:74191600-74192400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:74191600-74192400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:74191600-74192400	Enhancers	Fetal Brain Male	brain
12	chr5:74191800-74192000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:74191800-74192000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:74191800-74192200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:74191800-74192200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:74191800-74192200	Enhancers	Aorta	Aorta
17	chr5:74191800-74192200	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr5:74191800-74192200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr5:74191800-74192200	Enhancers	Ovary	ovary
20	chr5:74191800-74192200	Enhancers	Pancreas	Pancrea
21	chr5:74191800-74192200	Enhancers	NHEK	skin
22	chr5:74191800-74192400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr5:74191800-74192400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:74191800-74192400	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr5:74191800-74192400	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr5:74191800-74192400	Enhancers	Osteobl	bone
27	chr5:74191800-74193000	Enhancers	Cortex derived primary cultured neurospheres	brain

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