Variant report

Variant	rs539928739
Chromosome Location	chr10:99478645-99478646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99477505..99481349-chr10:99484055..99486700,3	MCF-7	breast:
2	chr10:99446352..99448545-chr10:99478274..99479924,2	MCF-7	breast:
3	chr10:99444102..99447131-chr10:99475724..99478855,3	MCF-7	breast:
4	chr10:99401337..99403693-chr10:99478235..99480260,2	MCF-7	breast:
5	chr10:99477514..99480441-chr10:99495281..99497954,2	MCF-7	breast:
6	chr10:99476839..99480454-chr10:99481730..99484335,3	K562	blood:
7	chr10:99476464..99480454-chr10:99480682..99484335,5	K562	blood:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv519864	chr10:99478081-99486644	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99473800-99479000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:99475000-99479400	Weak transcription	Fetal Kidney	kidney
3	chr10:99475800-99478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:99475800-99479200	Genic enhancers	Colon Smooth Muscle	Colon
5	chr10:99476000-99478800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:99476000-99479600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:99476000-99479600	Genic enhancers	Fetal Muscle Leg	muscle
8	chr10:99476000-99479600	Genic enhancers	Fetal Stomach	stomach
9	chr10:99476200-99479200	Genic enhancers	NHLF	lung
10	chr10:99476200-99479600	Genic enhancers	Fetal Muscle Trunk	muscle
11	chr10:99476200-99486600	Weak transcription	Ovary	ovary
12	chr10:99476400-99479600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:99476600-99479000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:99476600-99479000	Genic enhancers	NHDF-Ad	bronchial
15	chr10:99476600-99479200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:99476600-99479600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:99476600-99479800	Strong transcription	Osteobl	bone
18	chr10:99476600-99486200	Weak transcription	HUVEC	blood vessel
19	chr10:99477000-99479000	Genic enhancers	Muscle Satellite Cultured Cells	--
20	chr10:99477000-99479000	Enhancers	Left Ventricle	heart
21	chr10:99477000-99479200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:99477000-99479600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:99477000-99480400	Enhancers	Colonic Mucosa	Colon
24	chr10:99477200-99479200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr10:99477200-99479600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:99477200-99479600	Enhancers	Stomach Mucosa	stomach
27	chr10:99477200-99479600	Enhancers	K562	blood
28	chr10:99477200-99486200	Weak transcription	NH-A	brain
29	chr10:99477400-99478800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:99477400-99478800	Flanking Active TSS	Hela-S3	cervix
31	chr10:99477400-99479000	Enhancers	Fetal Heart	heart
32	chr10:99477400-99479200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:99477400-99479600	Enhancers	Esophagus	oesophagus
34	chr10:99477400-99479600	Genic enhancers	Fetal Intestine Small	intestine
35	chr10:99477400-99480200	Enhancers	Duodenum Mucosa	Duodenum
36	chr10:99477600-99479000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:99477600-99479400	Enhancers	Lung	lung
38	chr10:99477600-99479600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:99477800-99478800	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr10:99477800-99479000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:99477800-99479000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr10:99477800-99479200	Enhancers	Adipose Nuclei	Adipose
43	chr10:99477800-99479200	Enhancers	Liver	Liver
44	chr10:99477800-99479400	Enhancers	Fetal Brain Male	brain
45	chr10:99477800-99479600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr10:99477800-99479600	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr10:99477800-99479600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr10:99478000-99478800	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr10:99478000-99478800	Enhancers	Primary hematopoietic stem cells	blood
50	chr10:99478000-99478800	Enhancers	Right Ventricle	heart

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