Variant report

Variant	rs539933862
Chromosome Location	chr6:132404996-132404997
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132392000-132405000	Weak transcription	HMEC	breast
2	chr6:132392000-132405400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132396000-132406200	Weak transcription	Aorta	Aorta
4	chr6:132402400-132405000	Weak transcription	NHLF	lung
5	chr6:132402400-132406400	Weak transcription	Ovary	ovary
6	chr6:132402600-132405000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132403000-132406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:132403400-132406200	Enhancers	HUVEC	blood vessel
9	chr6:132403400-132406400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:132403800-132406200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:132404000-132405000	Enhancers	HSMM	muscle
12	chr6:132404000-132405400	Weak transcription	NHDF-Ad	bronchial
13	chr6:132404000-132405800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:132404000-132406400	Enhancers	HSMMtube	muscle
15	chr6:132404000-132406400	Enhancers	Osteobl	bone
16	chr6:132404000-132410400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:132404200-132406200	Enhancers	Fetal Heart	heart
18	chr6:132404600-132406200	Enhancers	NH-A	brain
19	chr6:132404600-132407600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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