Variant report

Variant	rs539942403
Chromosome Location	chr10:23701019-23701020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv10624	chr10:23699287-23708458	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3314141	chr10:23700976-23708572	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23693800-23706400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:23693800-23706400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:23694600-23701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:23694600-23707800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:23697000-23706400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:23698400-23701200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:23700000-23702800	Weak transcription	Primary B cells from cord blood	blood
8	chr10:23700600-23703800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:23701000-23701200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr10:23701000-23701400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:23701000-23701600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:23701000-23701600	Enhancers	HSMM	muscle
13	chr10:23701000-23701600	Enhancers	HSMMtube	muscle
14	chr10:23701000-23701600	Enhancers	Osteobl	bone
15	chr10:23701000-23701800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:23701000-23703400	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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