Variant report

Variant	rs539950098
Chromosome Location	chr18:45478700-45478701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45452201..45455106-chr18:45476820..45479374,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3449606	chr18:45477204-45479302	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3420140	chr18:45477754-45478802	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45472400-45479800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:45475600-45479800	Weak transcription	Aorta	Aorta
3	chr18:45475600-45480000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr18:45476000-45480200	Weak transcription	Brain Substantia Nigra	brain
5	chr18:45476600-45479800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr18:45476600-45479800	Weak transcription	Adipose Nuclei	Adipose
7	chr18:45477200-45480000	Weak transcription	A549	lung
8	chr18:45477600-45479800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr18:45478000-45490800	Weak transcription	Pancreas	Pancrea
10	chr18:45478400-45478800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr18:45478400-45479800	Enhancers	Dnd41	blood
12	chr18:45478400-45480400	Enhancers	Fetal Brain Male	brain
13	chr18:45478400-45481000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr18:45478400-45481200	Enhancers	Primary hematopoietic stem cells	blood
15	chr18:45478600-45478800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:45478600-45478800	Bivalent Enhancer	Primary B cells from cord blood	blood
17	chr18:45478600-45478800	Enhancers	Psoas Muscle	Psoas
18	chr18:45478600-45478800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr18:45478600-45478800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
20	chr18:45478600-45479000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr18:45478600-45480000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr18:45478600-45480600	Enhancers	Primary B cells from peripheral blood	blood
23	chr18:45478600-45482000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links