Variant report

Variant	rs539961993
Chromosome Location	chr8:108504820-108504821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825819	chr8:108495057-108506185	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1832361	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844679	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv611852	chr8:108503702-108505854	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv611853	chr8:108503702-108505986	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
6	nsv611854	chr8:108503702-108506185	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3480583	chr8:108504234-108506607	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv824702	chr8:108504672-108506345	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv819326	chr8:108504700-108506635	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3480581	chr8:108504738-108506441	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3480582	chr8:108504805-108506368	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv396231	chr8:108504819-108506363	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3480584	chr8:108504819-108506365	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108497800-108508400	Weak transcription	Left Ventricle	heart
2	chr8:108498200-108506800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:108498400-108506800	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:108498400-108507400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:108499000-108506600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:108499400-108507000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:108499600-108506800	Weak transcription	Fetal Thymus	thymus
8	chr8:108499800-108506800	Weak transcription	Aorta	Aorta
9	chr8:108500400-108507200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:108501800-108505200	Weak transcription	Fetal Kidney	kidney
11	chr8:108502400-108507600	Weak transcription	Psoas Muscle	Psoas
12	chr8:108502600-108506800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:108502800-108505400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:108502800-108506400	Weak transcription	NHDF-Ad	bronchial
15	chr8:108502800-108506400	Weak transcription	NHLF	lung
16	chr8:108502800-108506600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:108502800-108506600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:108502800-108506600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:108502800-108506600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:108502800-108506600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:108502800-108506600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:108502800-108506600	Weak transcription	Brain Germinal Matrix	brain
23	chr8:108502800-108506600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:108502800-108506800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:108502800-108506800	Weak transcription	Fetal Brain Female	brain
26	chr8:108502800-108507000	Weak transcription	Ovary	ovary
27	chr8:108502800-108507200	Weak transcription	A549	lung
28	chr8:108502800-108507600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:108502800-108509200	Weak transcription	NHEK	skin
30	chr8:108503000-108505200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:108503000-108505200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr8:108503000-108505800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:108503000-108506600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:108503000-108506600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:108503000-108506600	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:108503000-108506800	Weak transcription	Adipose Nuclei	Adipose
37	chr8:108503000-108507400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:108503000-108508400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr8:108503200-108505400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:108503200-108506200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:108503600-108505200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:108503600-108506400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:108503800-108505400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr8:108503800-108506200	Weak transcription	Osteobl	bone
45	chr8:108503800-108506800	Weak transcription	Brain Anterior Caudate	brain
46	chr8:108503800-108506800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:108504000-108505200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:108504000-108505200	Enhancers	Primary hematopoietic stem cells	blood
49	chr8:108504000-108506400	Weak transcription	Fetal Lung	lung
50	chr8:108504000-108506600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links