The 2.0 version of rSNPBase

Variant report

Variant rs539962461
Chromosome Location chr11:17898490-17898491
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:17838400-17971600 Weak transcription Gastric stomach
2 chr11:17863800-17939200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr11:17864400-17944800 Weak transcription Ovary ovary
4 chr11:17864800-17899400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr11:17868600-17914000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr11:17869000-17909600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr11:17869000-17916400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr11:17872600-17926600 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr11:17876400-17900200 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr11:17876800-17914000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr11:17878200-17898600 Weak transcription GM12878-XiMat blood
12 chr11:17882800-17943800 Weak transcription Rectal Smooth Muscle rectum
13 chr11:17884400-17919800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr11:17885800-17939200 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr11:17886000-17965200 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr11:17888200-17915600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr11:17888200-17916200 Weak transcription HSMMtube muscle
18 chr11:17891400-17907400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr11:17892000-17900600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr11:17893000-17901000 Strong transcription Primary T cells from cord blood blood
21 chr11:17894600-17899600 Strong transcription Primary T helper cells fromperipheralblood blood
22 chr11:17894600-17903000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr11:17894800-17898800 Strong transcription Primary T helper naive cells fromperipheralblood blood
24 chr11:17895200-17939000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr11:17895400-17899400 Strong transcription Aorta Aorta
26 chr11:17895400-17901800 Enhancers Fetal Thymus thymus
27 chr11:17895400-17901800 Enhancers Thymus Thymus
28 chr11:17895800-17898600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr11:17895800-17899800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr11:17895800-17914600 Weak transcription Liver Liver
31 chr11:17895800-17937200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr11:17895800-17943400 Weak transcription Pancreas Pancrea
33 chr11:17896000-17909400 Weak transcription Fetal Brain Female brain
34 chr11:17896000-17914000 Weak transcription Dnd41 blood
35 chr11:17896000-17914200 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr11:17896000-17915600 Weak transcription Brain Anterior Caudate brain
37 chr11:17896000-17944600 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr11:17896000-17968000 Weak transcription Duodenum Mucosa Duodenum
39 chr11:17896400-17915800 Weak transcription Fetal Intestine Small intestine
40 chr11:17896400-17916400 Weak transcription Right Ventricle heart
41 chr11:17896400-17939200 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr11:17896400-17968000 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr11:17896800-17898600 Weak transcription Primary T cells fromperipheralblood blood
44 chr11:17896800-17914200 Weak transcription Primary hematopoietic stem cells blood
45 chr11:17896800-17939200 Weak transcription Stomach Smooth Muscle stomach
46 chr11:17897000-17899600 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr11:17897000-17914000 Weak transcription Primary B cells from peripheral blood blood
48 chr11:17897400-17898800 Enhancers H1 Cell Line embryonic stem cell
49 chr11:17897400-17900200 Weak transcription HepG2 liver
50 chr11:17897400-17912800 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015