Variant report

Variant	rs539978027
Chromosome Location	chr14:24506297-24506298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24503791..24508058-chr14:24562194..24566408,5	MCF-7	breast:
2	chr14:24505124..24506975-chr14:24520204..24522367,2	MCF-7	breast:
3	chr14:24505359..24507247-chr14:24702110..24704400,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186648	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000100889	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1217	chr14:24400565-24512689	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	esv2761633	chr14:24423582-24513917	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv564047	chr14:24428509-24525634	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv901497	chr14:24429249-24514449	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1052180	chr14:24429298-24555710	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv826901	chr14:24457315-24508468	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1048292	chr14:24474511-24513905	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	nsv1049192	chr14:24478882-24519250	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
12	nsv1037929	chr14:24478882-24522447	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
13	nsv1052857	chr14:24479375-24513905	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
14	nsv1047042	chr14:24484459-24513905	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
15	nsv1038839	chr14:24488131-24510197	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
16	nsv1044763	chr14:24488131-24513905	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
17	nsv1051893	chr14:24488131-24519250	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
18	nsv1043854	chr14:24488131-24522447	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
19	nsv1049849	chr14:24488384-24513905	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
20	nsv516023	chr14:24489605-24550224	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	nsv1038278	chr14:24494063-24513905	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
22	nsv1042507	chr14:24494153-24513905	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
23	nsv983808	chr14:24503854-24523979	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
24	nsv482170	chr14:24505710-24520580	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24505000-24506400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr14:24505000-24506600	Flanking Active TSS	Dnd41	blood
3	chr14:24505200-24506400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:24505200-24506400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:24505200-24506400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr14:24505200-24506400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr14:24505200-24506400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr14:24505200-24506400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:24505200-24506400	Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr14:24505200-24506400	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr14:24505200-24506400	Active TSS	Brain Germinal Matrix	brain
12	chr14:24505200-24506400	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr14:24505200-24506400	Flanking Active TSS	Pancreas	Pancrea
14	chr14:24505200-24506400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr14:24505400-24506400	Flanking Active TSS	HMEC	breast
16	chr14:24505400-24506400	Active TSS	HSMM	muscle
17	chr14:24505400-24507000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:24505600-24506400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:24505600-24506400	Active TSS	Fetal Kidney	kidney
20	chr14:24505600-24506400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr14:24505600-24506400	Active TSS	NHDF-Ad	bronchial
22	chr14:24505600-24506400	Active TSS	NHLF	lung
23	chr14:24505800-24506400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:24505800-24506400	Enhancers	Fetal Brain Male	brain
25	chr14:24505800-24506400	Flanking Active TSS	Fetal Muscle Trunk	muscle
26	chr14:24505800-24506400	Flanking Active TSS	Fetal Stomach	stomach
27	chr14:24506000-24506400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:24506000-24506400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr14:24506000-24506400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:24506000-24506400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr14:24506000-24506400	Flanking Active TSS	GM12878-XiMat	blood
32	chr14:24506200-24506400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:24506200-24506400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:24506200-24506400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:24506200-24506400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:24506200-24506400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr14:24506200-24506400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:24506200-24506400	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:24506200-24506400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr14:24506200-24506400	Enhancers	Primary hematopoietic stem cells	blood
41	chr14:24506200-24506400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr14:24506200-24506400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:24506200-24506400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr14:24506200-24506400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr14:24506200-24506400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:24506200-24506400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:24506200-24506400	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr14:24506200-24506400	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr14:24506200-24506400	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr14:24506200-24506400	Enhancers	Colon Smooth Muscle	Colon

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