Variant report

Variant	rs540017702
Chromosome Location	chr4:127975966-127975967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3400770	chr4:127975779-127975976	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
3	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:127970200-127976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:127970200-127976600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:127971000-127976400	Weak transcription	NH-A	brain
7	chr4:127971400-127976200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:127975600-127977600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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