Variant report

Variant	rs540021457
Chromosome Location	chr11:8868428-8868429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv975830	chr11:8867561-8873550	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8862200-8881200	Weak transcription	Hela-S3	cervix
2	chr11:8862400-8870600	Weak transcription	Placenta	Placenta
3	chr11:8862400-8874600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:8862400-8880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:8862400-8880000	Weak transcription	Spleen	Spleen
6	chr11:8862400-8885000	Weak transcription	NHLF	lung
7	chr11:8862400-8888400	Weak transcription	Right Atrium	heart
8	chr11:8862600-8868800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:8862600-8876600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:8862600-8885200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:8863200-8890400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:8864000-8872200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:8864000-8888000	Weak transcription	Fetal Intestine Small	intestine
14	chr11:8865400-8873600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:8865800-8886000	Weak transcription	Fetal Stomach	stomach
16	chr11:8866000-8874200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:8867400-8873400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:8867600-8868800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:8867600-8869000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:8867600-8870000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:8867600-8872000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:8867800-8872200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:8868000-8868800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:8868200-8876200	Weak transcription	Ovary	ovary
25	chr11:8868400-8868600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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