Variant report

Variant	rs540023473
Chromosome Location	chr15:75161902-75161903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75158451..75161193-chr15:75161527..75164480,2	MCF-7	breast:
2	chr15:75160386..75162406-chr15:75181750..75183774,2	MCF-7	breast:
3	chr15:75157220..75162664-chr15:75181204..75183708,6	MCF-7	breast:
4	chr15:75134049..75139648-chr15:75161531..75167020,13	MCF-7	breast:
5	chr15:75136180..75138079-chr15:75161900..75164141,2	K562	blood:
6	chr15:75152352..75156342-chr15:75158618..75163297,4	K562	blood:

Variant related genes	Relation type
ENSG00000140474	Chromatin interaction
ENSG00000178802	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv827386	chr15:75161362-75166473	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
4	nsv827388	chr15:75161362-75169121	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
2	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75143600-75163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:75146000-75164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:75146200-75163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:75146400-75163200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:75146600-75163000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:75146600-75164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:75147000-75164800	Weak transcription	Ovary	ovary
10	chr15:75147200-75164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:75152200-75162200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:75153600-75162200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:75155000-75162000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:75155800-75164400	Genic enhancers	Fetal Intestine Small	intestine
15	chr15:75156000-75164800	Enhancers	Fetal Intestine Large	intestine
16	chr15:75156600-75163800	Enhancers	Stomach Mucosa	stomach
17	chr15:75156800-75163600	Enhancers	Right Ventricle	heart
18	chr15:75157000-75163000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr15:75157800-75162000	Enhancers	Adipose Nuclei	Adipose
20	chr15:75157800-75164600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr15:75158000-75165000	Enhancers	Spleen	Spleen
22	chr15:75158200-75162200	Enhancers	HepG2	liver
23	chr15:75158200-75164600	Enhancers	Pancreas	Pancrea
24	chr15:75158200-75165000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:75158400-75164800	Enhancers	Liver	Liver
26	chr15:75158600-75162000	Genic enhancers	Fetal Muscle Leg	muscle
27	chr15:75158600-75162000	Enhancers	Right Atrium	heart
28	chr15:75158600-75163800	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr15:75158800-75162000	Weak transcription	NHLF	lung
30	chr15:75159000-75164600	Weak transcription	Osteobl	bone
31	chr15:75159200-75162200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr15:75159200-75164000	Enhancers	Small Intestine	intestine
33	chr15:75159200-75164800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr15:75159400-75163000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:75159400-75163600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:75159400-75163800	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr15:75159600-75164000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr15:75159800-75164000	Enhancers	Lung	lung
39	chr15:75160200-75162400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:75160200-75162400	Enhancers	Brain Anterior Caudate	brain
41	chr15:75160200-75164000	Enhancers	HUVEC	blood vessel
42	chr15:75160400-75163600	Genic enhancers	Thymus	Thymus
43	chr15:75160600-75162000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:75160600-75162200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:75160600-75162600	Enhancers	Primary B cells from cord blood	blood
46	chr15:75160600-75162800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:75160600-75162800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:75160600-75163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:75160600-75164800	Enhancers	Fetal Thymus	thymus
50	chr15:75160800-75162000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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