Variant report

Variant	rs540035457
Chromosome Location	chr6:27739951-27739952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27739695..27740963-chr6:27759065..27761089,16	K562	blood:
2	chr6:27734440..27736801-chr6:27737530..27740059,2	MCF-7	breast:
3	chr6:27739073..27741027-chr6:27745777..27747654,2	MCF-7	breast:
4	chr6:27739947..27740882-chr6:27863320..27863903,2	MCF-7	breast:
5	chr6:27739033..27741746-chr6:27859741..27864779,4	MCF-7	breast:
6	chr6:27738868..27742221-chr6:27743370..27745719,4	MCF-7	breast:
7	chr6:27113969..27118292-chr6:27739764..27746039,7	K562	blood:
8	chr6:27739903..27740843-chr6:27759520..27760687,12	MCF-7	breast:
9	chr6:27738620..27740539-chr6:27758419..27760190,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	esv3349979	chr6:27739754-27740303	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27725600-27743000	Weak transcription	Right Atrium	heart
2	chr6:27730600-27740000	Weak transcription	Spleen	Spleen
3	chr6:27730800-27740000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:27738200-27740200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
5	chr6:27738600-27741600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:27738600-27742400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:27738800-27740000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr6:27738800-27740800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr6:27738800-27741800	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:27739000-27740000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:27739000-27740000	Enhancers	K562	blood
12	chr6:27739000-27742000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:27739000-27742400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:27739000-27742400	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:27739200-27742200	Enhancers	GM12878-XiMat	blood
16	chr6:27739400-27740600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr6:27739400-27740800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:27739400-27741600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr6:27739600-27740000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
20	chr6:27739600-27740000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:27739600-27740000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:27739600-27740000	Flanking Active TSS	NHEK	skin
23	chr6:27739600-27740200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
24	chr6:27739600-27740200	Enhancers	Dnd41	blood
25	chr6:27739600-27740400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:27739600-27740400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr6:27739800-27740000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
28	chr6:27739800-27740000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:27739800-27740000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:27739800-27740000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:27739800-27740000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:27739800-27740000	Bivalent Enhancer	Brain Germinal Matrix	brain
33	chr6:27739800-27740000	Bivalent Enhancer	Fetal Heart	heart
34	chr6:27739800-27740000	Enhancers	Hela-S3	cervix
35	chr6:27739800-27740000	Enhancers	HepG2	liver
36	chr6:27739800-27740000	Enhancers	NHDF-Ad	bronchial
37	chr6:27739800-27740000	Flanking Bivalent TSS/Enh	Osteobl	bone
38	chr6:27739800-27740200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:27739800-27740200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:27739800-27740200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:27739800-27740200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:27739800-27740200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
43	chr6:27739800-27740200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:27739800-27740200	Bivalent Enhancer	Brain Hippocampus Middle	brain
45	chr6:27739800-27740400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
46	chr6:27739800-27740400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:27739800-27740400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:27739800-27740400	Flanking Active TSS	Colonic Mucosa	Colon
49	chr6:27739800-27740400	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr6:27739800-27740400	Flanking Active TSS	HMEC	breast

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